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I tested different doughs until I found the one that makes eggnog thumbprint cookies soft, chocolatey, and totally foolproof. The eggnog ganache melts together in minutes and tastes amazing. These cookies feel festive and easy for any home baker to make.

A close-up of chocolate cookies with creamy centers, sprinkled with cinnamon, surrounded by cinnamon sticks, star anise, and cloves on a white surface. One cookie has a bite taken out of it.
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When I started testing these eggnog thumbprint cookies, I first tried using my original chocolate cookie base. It is chewy, rich, and has been tested so many times that it felt like the perfect place to start. I rolled the dough in sugar, pressed the indent, and baked the first batch. The indent disappeared completely and the cookies spread into smooth chocolate circles.

I tested again by freezing the dough for thirty minutes before baking to see if that would help the shape hold. It made no difference. That was my cue to build a new dough from the ground up that could support a filling. I increased the flour, used baking powder, added cornstarch, and swapped in two egg yolks for extra chew since I removed the corn syrup.

A close-up of a chocolate cookie with a creamy center and a bite taken out, surrounded by whole cookies, cinnamon sticks, and star anise on a white surface.

The first version of this new dough was too dry and the edges cracked when I pressed in the teaspoon. I increased the butter and switched to all brown sugar which helped with moisture and spread, but it still needed more richness. The final adjustment was adding one more yolk. That small change gave the dough enough fat to stay soft, bake cleanly, and keep a perfect thumbprint shape every time.

With the base locked in, I started developing the eggnog filling. I wanted the flavor of real eggnog but needed it to thicken into a spoonable center. So I created an eggnog ganache using white chocolate chips and hot eggnog in place of heavy cream. I tested different ratios until the filling set with a smooth, custard like texture that holds beautifully in the center of each cookie.

The ganache melts together in minutes and thickens into the perfect holiday filling. A little nutmeg on top brings that classic eggnog warmth. Every part of this recipe was tested with purpose so home bakers can trust that it will turn out rich, soft, and perfectly festive.

A carton of Southern Comfort eggnog, a glass jar of ground nutmeg, and a bowl of white chocolate chips are arranged on a light surface, with each ingredient labeled.

Key Ingredients You Need & Why

These main ingredients are key to success with eggnog thumbprints. You can also jump to the recipe card for the full recipe.

  • Dutch processed cocoa powder: Creates a deep chocolate flavor and gives the cookies a rich color and smooth texture.
  • Brown sugar: Adds moisture, chew, and a warm caramel note that pairs perfectly with the filling.
  • Butter: Provides flavor, tenderness, and helps create a soft crumb that still holds its shape.
  • Cornstarch: Gives the dough stability so the thumbprint shape stays defined while baking.
  • Egg yolks: Add fat and richness which keeps the cookies soft and prevents cracking.
  • Eggnog: Used as the liquid base for the ganache and brings warm, classic holiday flavor.
  • White chocolate chips: Melt with the hot eggnog to create a smooth, creamy filling that sets perfectly.
  • Nutmeg: Finishes the cookies with that signature eggnog warmth.
Top-down view of labeled baking ingredients in bowls on a white surface: baking powder, granulated sugar, brown sugar, cornstarch, salt, Dutch processed cocoa powder, all-purpose flour, two sticks of butter, a whole egg, and an egg yolk.

How to Make Eggnog Thumbprint Cookies

These eggnog cookies will be the star of your holiday party! Follow my simple steps below for cookie success. You can also jump to the recipe card for the full recipe.

For the Cookies

Prep baking sheets. Line baking sheets with parchment paper or silicone mats.

Combine dry ingredients. In a medium bowl, whisk together the flour, cocoa powder, salt, baking powder, and cornstarch. Set aside.

Beat butter and sugar. In a large mixing bowl, beat the butter and brown sugar on medium speed until light and fluffy, about 1–2 minutes.

Add in eggs. Beat in the egg and egg yolk for 30 seconds, scraping down the sides as needed.

Combine wet and dry ingredients. Gradually add the dry mixture to the wet ingredients, mixing on low speed until just combined. The dough will be very thick. 

Form dough balls. Scoop 1 tablespoon of dough (use a #60 cookie scoop) and roll into smooth balls. Roll each ball in granulated sugar and place 2 inches apart on prepared baking sheets.

Press and chill cookies. Use the back of a teaspoon to press a divot into the center of each cookie before baking. Place the baking sheet in the freezer for 10 minutes to firm up the dough. You can freeze longer if needed.

Bake and finish. Preheat the oven to 350°F (177°C). Bake for 10-11 minutes or until the edges are set but the centers still look soft. Remove from the oven and immediately use the teaspoon again to gently deepen the center indentation as it disappears while baking. 

Cool. Allow cookies to cool completely before filling.

For the Filling

Combine filling ingredients. Place the white chocolate chips in a bowl. In a microwave-safe measuring cup, microwave the eggnog for 30 to 45 seconds, or until steaming and very hot. Pour the hot eggnog over the white chocolate chips and let it sit for 2 to 3 minutes. Stir until the chocolate is fully melted and the ganache is smooth. If needed, microwave the mixture in 10-second bursts to finish melting. Allow the ganache to set and thicken for at least 30 minutes. Speed up the process by putting it in the fridge. 

A spoon is filling the center of a chocolate thumbprint cookie with creamy yellow filling on a wire cooling rack, surrounded by other similar cookies.

Add filling to cookies. Once thickened, spoon about 1 teaspoon of the eggnog ganache into the center of each cookie. Lightly dust the tops with ground nutmeg. Allow the ganache to set before serving or storing.

Equipment Needed

Chocolate thumbprint cookies with a creamy white center, dusted with cinnamon, are arranged on a white surface. Whole cloves and cinnamon sticks are scattered around as decoration.

More Thumbprint Cookie Recipes

Close-up of chocolate thumbprint cookies with a creamy, light-colored filling in the center, sprinkled with cinnamon or cocoa powder, arranged on a white surface.
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Eggnog Thumbprint Cookies

By: Beth
Prep Time: 10 minutes
Cook Time: 10 minutes
Chill Time: 10 minutes
Servings: 35 cookies
I tested different doughs until I found the one that makes eggnog thumbprint cookies soft, chocolatey, and totally foolproof. The eggnog ganache melts together in minutes and tastes amazing. These cookies feel festive and easy for any home baker to make.

Ingredients

Cookies

  • 1 ¾ cup (210g) all-purpose flour
  • ½ cup (40g) Dutch-processed cocoa powder
  • ½ tsp salt
  • ½ tsp baking powder
  • 1 tsp cornstarch
  • ¾ cup (170g) unsalted butter
  • 1 cup (213g) brown sugar
  • 1 large egg
  • 1 large egg yolk
  • ¼ cup (50g) granulated sugar, for rolling

Filling

  • 6 Tbsp eggnog
  • 1 cup (170g) white chocolate chips
  • Nutmeg, for dusting
Colorful cupcakes with pink frosting and sprinkles on the left, lemon-glazed muffins on the right, and two baking books in the center with the text Baking is the new Black Friday. Shop Black Friday.

Instructions 

Cookies

  • Line baking sheets with parchment paper or silicone mats.
  • In a medium bowl, whisk together the flour, cocoa powder, salt, baking powder, and cornstarch. Set aside.
    1 ¾ cup (210g) all-purpose flour, ½ cup (40g) Dutch-processed cocoa powder, ½ tsp salt, ½ tsp baking powder, 1 tsp cornstarch
  • In a large mixing bowl, beat the butter and brown sugar on medium speed until light and fluffy, about 1–2 minutes.
    ¾ cup (170g) unsalted butter, 1 cup (213g) brown sugar
  • Beat in the egg and egg yolk for 30 seconds, scraping down the sides as needed.
    1 large egg, 1 large egg yolk
  • Gradually add the dry mixture to the wet ingredients, mixing on low speed until just combined. The dough will be very thick.
  • Scoop 1 tablespoon of dough (use a #60 cookie scoop) and roll into smooth balls. Roll each ball in granulated sugar and place 2 inches apart on prepared baking sheets.
    ¼ cup (50g) granulated sugar
  • Use the back of a teaspoon to press a divot into the center of each cookie before baking. Place the baking sheet in the freezer for 10 minutes to firm up the dough. You can freeze longer if needed.
  • Preheat the oven to 350°F (177°C). Bake for 10-11 minutes or until the edges are set but the centers still look soft. Remove from the oven and immediately use the teaspoon again to gently deepen the center indentation as it disappears while baking.
  • Allow cookies to cool completely before filling.

Filling

  • Place the white chocolate chips in a bowl. In a microwave-safe measuring cup, microwave the eggnog for 30 to 45 seconds, or until steaming and very hot. Pour the hot eggnog over the white chocolate chips and let it sit for 2 to 3 minutes. Stir until the chocolate is fully melted and the ganache is smooth. If needed, microwave the mixture in 10-second bursts to finish melting. Allow the ganache to set and thicken for at least 30 minutes. Speed up the process by putting it in the fridge.
    6 Tbsp eggnog, 1 cup (170g) white chocolate chips
  • Once thickened, spoon about 1 teaspoon of the eggnog ganache into the center of each cookie. Lightly dust the tops with ground nutmeg. Allow the ganache to set before serving or storing.
    Nutmeg

Notes

Gluten Free: Use a 1:1 gluten-free baking flour blend in place of all-purpose flour. I use King Arthur’s Measure for Measure Gluten Free Flour.
To Store: Keep in an airtight container for up to four days.
To Make Ahead: Chill the dough for up to twenty four hours before shaping and baking.
To Freeze: Flash freeze the finished cookies, once frozen transfer to a freezer safe container or bag. To thaw, place a single layer of cookies on a baking sheet and thaw on the counter overnight. To freeze the cookie dough, roll into balls and flash freeze on a baking sheet. Then transfer to a freezer safe container or bag. To thaw, place in the refrigerator overnight, then roll in granular sugar, make the indent and bake.
How to Properly Measure Flour: The most accurate way to measure flour is by using a kitchen scale and weighing it in grams. If you do not have a scale, use the spoon and level method. Start by aerating the flour with a whisk or spoon because flour becomes compact as it sits. Spoon the flour into your measuring cup without tapping or shaking the cup, since that packs in extra flour. Level off the top with the back of a butter knife. Re fluff the flour each time you scoop so you get a consistent and accurate measurement.

Nutrition

Serving: 1cookie | Calories: 124kcal | Carbohydrates: 16g | Protein: 2g | Fat: 6g | Saturated Fat: 4g | Polyunsaturated Fat: 0.3g | Monounsaturated Fat: 2g | Trans Fat: 0.2g | Cholesterol: 24mg | Sodium: 50mg | Potassium: 56mg | Fiber: 1g | Sugar: 11g | Vitamin A: 143IU | Vitamin C: 0.1mg | Calcium: 27mg | Iron: 1mg

Nutrition Disclosure

All nutritional values are approximate and provided to the reader as a courtesy. Changing ingredients and/or quantities will alter the estimated nutritional calculations.

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About Beth

I believe that everyone should have a go-to dessert to bring to parties! With hundreds of recipes, I'll help you find yours!

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